STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT78972.1Type II secretion system protein F (GspF). (327 aa)    
Predicted Functional Partners:
SIT78966.1
Type II secretion system protein F (GspF).
 
  
0.999
SIT78953.1
Pilus assembly protein CpaE.
 
  
 0.985
SIT78962.1
Pilus assembly protein CpaF; Manually curated.
 
  
 0.980
SIT78939.1
Pilus assembly protein CpaB.
 
  
 0.978
SIT78943.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.947
SIT78993.1
Hypothetical protein.
 
    0.940
SIT78977.1
Tetratricopeptide repeat-containing protein.
 
  
 0.938
SIT80433.1
Flagellar protein FlbT.
   
    0.933
SIT78982.1
Tetratricopeptide repeat-containing protein.
 
  
 0.930
SIT78987.1
Prepilin peptidase CpaA.
 
   
 0.884
Your Current Organism:
Pontibaca methylaminivorans
NCBI taxonomy Id: 515897
Other names: DSM 21219, KCTC 22497, P. methylaminivorans, Pontibaca methylaminivorans Kim et al. 2010, alpha proteobacterium GRP21, alpha proteobacterium PH34, strain GRP21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.