STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT80186.1Response regulator receiver protein. (242 aa)    
Predicted Functional Partners:
SIT75431.1
Flagellar motor switch protein FliN/FliY.
   
 
  0.960
SIT81368.1
Histidine kinase.
 
 0.944
SIT75444.1
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
   
    0.942
SIT86710.1
PAS domain S-box-containing protein.
 
 0.912
SIT82629.1
Flagellar motor switch protein FliM.
  
 
  0.899
SIT74334.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 0.895
SIT86728.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
   
 0.895
SIT80088.1
Signal transduction histidine kinase.
  
 0.871
SIT84820.1
Two-component system, OmpR family, sensor histidine kinase TorS.
  
 0.871
SIT75455.1
Hypothetical protein.
   
    0.867
Your Current Organism:
Pontibaca methylaminivorans
NCBI taxonomy Id: 515897
Other names: DSM 21219, KCTC 22497, P. methylaminivorans, Pontibaca methylaminivorans Kim et al. 2010, alpha proteobacterium GRP21, alpha proteobacterium PH34, strain GRP21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.