STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT81451.1Hypothetical protein. (127 aa)    
Predicted Functional Partners:
SIT81456.1
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family.
       0.794
SIT82396.1
Protein of unknown function.
  
     0.762
SIT77185.1
Hypothetical protein.
  
     0.758
SIT81947.1
Hypothetical protein.
  
     0.754
SIT78577.1
Protein of unknown function.
  
     0.744
SIT81736.1
Hypothetical protein.
  
     0.709
SIT76201.1
Sporulation related domain-containing protein.
  
     0.706
SIT82854.1
Exodeoxyribonuclease-5.
  
     0.706
SIT77584.1
Hypothetical protein.
  
     0.704
SIT80045.1
SseB protein N-terminal domain-containing protein.
  
    0.674
Your Current Organism:
Pontibaca methylaminivorans
NCBI taxonomy Id: 515897
Other names: DSM 21219, KCTC 22497, P. methylaminivorans, Pontibaca methylaminivorans Kim et al. 2010, alpha proteobacterium GRP21, alpha proteobacterium PH34, strain GRP21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.