STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT81884.1Phage major capsid protein, HK97 family. (411 aa)    
Predicted Functional Partners:
SIT81895.1
Phage portal protein.
   
 
 0.904
SIT81888.1
Hypothetical protein.
  
  
 0.872
SIT81877.1
HNH endonuclease.
       0.825
SIT81872.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
       0.824
SIT81867.1
Hypothetical protein.
       0.773
SIT81859.1
Phage conserved hypothetical protein, phiE125 gp8 family.
  
   0.694
SIT75337.1
Phage portal protein, HK97 family.
  
 
 0.601
SIT74749.1
Phage major tail protein, TP901-1 family.
  
   0.555
SIT74736.1
Protein of unknown function.
   
   0.553
SIT83816.1
Hint domain-containing protein.
   
   0.551
Your Current Organism:
Pontibaca methylaminivorans
NCBI taxonomy Id: 515897
Other names: DSM 21219, KCTC 22497, P. methylaminivorans, Pontibaca methylaminivorans Kim et al. 2010, alpha proteobacterium GRP21, alpha proteobacterium PH34, strain GRP21
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