STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT83647.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (253 aa)    
Predicted Functional Partners:
SIT77913.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.929
SIT78035.1
Cardiolipin synthase; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
 
 
  0.801
SIT86672.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
  
 
  0.734
SIT84124.1
Autotransporter secretion inner membrane protein TamB.
  
     0.543
fur
Manganese uptake regulator, Fur family; Belongs to the Fur family.
       0.508
SIT74063.1
Hypothetical protein.
  
     0.500
SIT82217.1
Outer membrane protein OmpU.
  
     0.494
SIT76278.1
Protein of unknown function.
  
     0.483
SIT75270.1
Transglycosylase SLT domain-containing protein; Manually curated.
  
     0.470
SIT86663.1
4-alpha-glucanotransferase.
    
 0.467
Your Current Organism:
Pontibaca methylaminivorans
NCBI taxonomy Id: 515897
Other names: DSM 21219, KCTC 22497, P. methylaminivorans, Pontibaca methylaminivorans Kim et al. 2010, alpha proteobacterium GRP21, alpha proteobacterium PH34, strain GRP21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.