STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT84128.1Autotransporter secretion outer membrane protein TamA. (600 aa)    
Predicted Functional Partners:
SIT84124.1
Autotransporter secretion inner membrane protein TamB.
 
 
 0.998
SIT84118.1
Glycosyltransferase, GT2 family.
       0.701
SIT75270.1
Transglycosylase SLT domain-containing protein; Manually curated.
  
     0.601
SIT85108.1
Hypothetical protein.
  
     0.471
SIT83647.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
     0.450
SIT80153.1
Hypothetical protein.
  
     0.445
SIT74063.1
Hypothetical protein.
  
     0.426
SIT84130.1
Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.419
SIT85210.1
Beta-barrel assembly machine subunit BamE.
  
   
 0.417
Your Current Organism:
Pontibaca methylaminivorans
NCBI taxonomy Id: 515897
Other names: DSM 21219, KCTC 22497, P. methylaminivorans, Pontibaca methylaminivorans Kim et al. 2010, alpha proteobacterium GRP21, alpha proteobacterium PH34, strain GRP21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.