STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT84461.1Outer membrane transport energization protein ExbB. (153 aa)    
Predicted Functional Partners:
SIT84467.1
Hypothetical protein.
 
  
 0.988
SIT84457.1
Cobaltochelatase CobN subunit.
 
    0.965
SIT74350.1
Cell division and transport-associated protein TolR.
  
 
 0.901
SIT84874.1
Outer membrane transport energization protein ExbD.
  
 
 0.901
SIT84452.1
Outer membrane receptor for ferrienterochelin and colicins.
 
    0.856
SIT74357.1
Cell division and transport-associated protein TolA.
  
 
 0.798
SIT84867.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.798
SIT84471.1
GTPase, G3E family.
  
  
 0.557
ribB
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.538
SIT75516.1
Cobaltochelatase CobN subunit.
 
    0.503
Your Current Organism:
Pontibaca methylaminivorans
NCBI taxonomy Id: 515897
Other names: DSM 21219, KCTC 22497, P. methylaminivorans, Pontibaca methylaminivorans Kim et al. 2010, alpha proteobacterium GRP21, alpha proteobacterium PH34, strain GRP21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.