Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_1004Pfam:pfam04784 Protein of unknown function, DUF547. (242 aa)    
Predicted Functional Partners:
VC82_1003
Glycoside hydrolase; Pfam:pfam13547 GTA TIM-barrel-like domain.
 
     0.804
VC82_1005
Rubredoxin--NAD(+) reductase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase.
 
     0.762
VC82_123
Pfam:pfam10111 Glycosyltransferase like family 2.
  
     0.679
VC82_998
Glycosyltransferase; Pfam:pfam09837 Uncharacterized protein conserved in bacteria (DUF2064).
 
     0.675
VC82_1376
Pfam:pfam09837 Uncharacterized protein conserved in bacteria (DUF2064).
 
     0.665
VC82_1000
Glycosyltransferase (family GT2); Pfam:pfam00535 Glycosyl transferase family 2.
  
     0.659
VC82_1011
Mannosyltransferase.
 
     0.613
VC82_1614
Sterol desaturase; Pfam:pfam04116 Fatty acid hydroxylase superfamily.
 
     0.584
VC82_1009
Pfam:pfam00535 Glycosyl transferase family 2.
 
     0.583
VC82_1008
FeS-binding protein; Pfam:pfam13237 4Fe-4S dicluster domain.
 
     0.564
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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