STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_104MFS transporter permease; Pfam:pfam07690 Major Facilitator Superfamily. (423 aa)    
Predicted Functional Partners:
VC82_435
Fibronectin, type III; Pfam:pfam13585 C-terminal domain of CHU protein family.
  
     0.626
VC82_1562
Hypothetical protein.
  
     0.603
VC82_106
Pfam:pfam01261 Xylose isomerase-like TIM barrel.
  
    0.592
VC82_105
Amidohydrolase; Pfam:pfam13147 Amidohydrolase.
       0.572
VC82_213
Hypothetical protein.
  
     0.466
VC82_857
Pfam:pfam00072 Response regulator receiver domain.
 
  
 0.452
VC82_2400
Hypothetical protein; Pfam:pfam01289 Thiol-activated cytolysin.
  
  
 0.450
VC82_2589
Conserved hypothetical periplasmic protein.
  
     0.442
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.