STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_1093Pfam:pfam02321 Outer membrane efflux protein. (465 aa)    
Predicted Functional Partners:
VC82_1094
Biotin attachment protein; Pfam:pfam13533 Biotin-lipoyl like.
 
 
 0.984
VC82_1096
Regulatory protein TetR.
 
     0.822
VC82_1092
Membrane protein; Pfam:pfam10035 Uncharacterized protein conserved in bacteria (DUF2179).
       0.786
VC82_1091
Thioredoxin; Pfam:pfam14595 Thioredoxin.
       0.603
VC82_125
Tetratricopeptide TPR_1 repeat-containing protein.
  
     0.454
VC82_1803
Putative Co/Zn/Cd efflux system membrane fusion protein; Pfam:pfam11827 Protein of unknown function (DUF3347); Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.447
VC82_854
Ribonuclease HII.
  
     0.442
VC82_2335
Membrane fusion protein; Pfam:pfam13437 HlyD family secretion protein.
  
   0.439
VC82_121
Pfam:pfam10099 Anti-sigma-K factor rskA.
  
     0.436
VC82_1956
RND transporter MFP subunit; Pfam:pfam13437 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.433
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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