STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_111Pfam:pfam02566 OsmC-like protein. (407 aa)    
Predicted Functional Partners:
VC82_110
Pfam:pfam10677 Protein of unknown function (DUF2490).
       0.556
VC82_109
Hypothetical protein.
       0.538
VC82_108
Amidohydrolase; Pfam:pfam13594 Amidohydrolase.
 
     0.513
VC82_2482
Pfam:pfam00534 Glycosyl transferases group 1.
   
 
 0.465
VC82_2496
Pfam:pfam00534 Glycosyl transferases group 1.
   
 
 0.465
VC82_2504
Pfam:pfam00534 Glycosyl transferases group 1.
   
 
 0.465
VC82_2507
Hypothetical protein; Pfam:pfam00534 Glycosyl transferases group 1.
   
 
 0.465
VC82_2513
Hypothetical protein; Pfam:pfam00534 Glycosyl transferases group 1.
   
 
 0.465
VC82_2657
Glycosyl transferase family 1.
   
 
 0.465
VC82_2788
Putative glycosyltransferase; Pfam:pfam13692 Glycosyl transferases group 1.
   
 
 0.465
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.