Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
VC82_1124Pfam:pfam13858 Protein of unknown function (DUF4199). (151 aa)    
Predicted Functional Partners:
VC82_2219
DNA glycosylase.
  
     0.725
VC82_730
arginyl-tRNA synthetase.
  
     0.725
VC82_2988
Membrane protein.
  
     0.722
VC82_2017
Hypothetical protein; Pfam:pfam13239 2TM domain.
  
     0.627
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.565
VC82_1126
Processing protease; Pfam:pfam05193 Peptidase M16 inactive domain.
       0.533
VC82_1125
Pfam:pfam05193 Peptidase M16 inactive domain.
       0.527
VC82_944
Efflux transporter, RND family, MFP subunit; Pfam:pfam13437 HlyD family secretion protein.
  
     0.514
VC82_2733
Hypothetical protein.
  
     0.496
VC82_1127
Hypothetical protein.
 
     0.488
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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