Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
VC82_113Hypothetical protein; Pfam:pfam13376 Bacteriocin-protection, YdeI or OmpD-Associated. (193 aa)    
Predicted Functional Partners:
VC82_112
Membrane protein.
       0.568
VC82_114
Peptidase M16; Pfam:pfam00675 Insulinase (Peptidase family M16); Belongs to the peptidase M16 family.
       0.568
VC82_2959
Response regulator receiver protein; Pfam:pfam04397 LytTr DNA-binding domain.
  
     0.559
gshB
Pfam:pfam02955 Prokaryotic glutathione synthetase, ATP-grasp domain; Belongs to the prokaryotic GSH synthase family.
  
     0.543
VC82_1661
Putative transcriptional regulator; Pfam:pfam01381 Helix-turn-helix.
  
     0.514
VC82_2867
Hypothetical protein; Pfam:pfam05013 N-formylglutamate amidohydrolase.
  
     0.474
VC82_885
Pfam:pfam14064 HmuY protein.
  
     0.465
VC82_115
Pfam:pfam00080 Copper/zinc superoxide dismutase (SODC).
       0.440
VC82_2968
Hypothetical protein.
  
     0.419
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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