Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC82_127Hypothetical protein; Pfam:pfam14224 Domain of unknown function (DUF4331). (230 aa)    
Predicted Functional Partners:
VC82_126
Hypothetical protein; Pfam:pfam14224 Domain of unknown function (DUF4331).
 
     0.955
VC82_125
Tetratricopeptide TPR_1 repeat-containing protein.
 
    0.905
VC82_121
Pfam:pfam10099 Anti-sigma-K factor rskA.
  
     0.731
VC82_671
Hypothetical protein.
  
     0.614
VC82_854
Ribonuclease HII.
  
     0.567
VC82_128
Pfam:pfam07766 LETM1-like protein.
       0.559
VC82_3005
Hypothetical protein.
  
 
   0.544
VC82_2893
Hypothetical protein.
  
     0.535
VC82_655
Hypothetical protein.
  
     0.523
VC82_1140
Glycosyl transferase family 39; Pfam:pfam13231 Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.506
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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