STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_1292Riboflavin synthase alpha chain; Pfam:pfam00677 Lumazine binding domain. (195 aa)    
Predicted Functional Partners:
ribB
Putative riboflavin biosynthesis protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
 
 0.999
VC82_3054
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
 0.999
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
 
 0.998
VC82_1693
Riboflavin biosynthesis protein RibF; Pfam:pfam06574 FAD synthetase; Belongs to the ribF family.
  
 
 0.929
hisI
Histidine biosynthesis bifunctional protein HisIE; Pfam:pfam01502 Phosphoribosyl-AMP cyclohydrolase; In the N-terminal section; belongs to the PRA-CH family.
  
    0.694
VC82_1291
4-hydroxythreonine-4-phosphate dehydrogenase; Pfam:pfam04166 Pyridoxal phosphate biosynthetic protein PdxA; Belongs to the PdxA family.
       0.672
VC82_1005
Rubredoxin--NAD(+) reductase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase.
   
    0.645
VC82_76
Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
   
    0.645
VC82_1290
DNA-binding protein; Pfam:pfam02620 Uncharacterized ACR, COG1399.
       0.440
rpmF
Pfam:pfam01783 Ribosomal L32p protein family; Belongs to the bacterial ribosomal protein bL32 family.
       0.439
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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