Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_151Hypothetical protein; Pfam:pfam12730 ABC-2 family transporter protein. (1167 aa)    
Predicted Functional Partners:
VC82_150
Pfam:pfam00005 ABC transporter.
 
 
 0.974
VC82_149
Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain.
 
     0.642
VC82_2068
Gliding motility-associated ABC transporter ATP-binding subunit GldA; Pfam:pfam00005 ABC transporter.
 
 
 0.543
VC82_2708
Pfam:pfam00005 ABC transporter.
  
 
 0.484
VC82_433
ABC transporter-related protein; Pfam:pfam00005 ABC transporter.
  
 
 0.484
VC82_152
Hypothetical protein.
       0.473
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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