STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_168Hypothetical protein; Pfam:pfam07366 SnoaL-like polyketide cyclase. (174 aa)    
Predicted Functional Partners:
VC82_169
Secreted protein.
 
     0.738
VC82_167
Pfam:pfam07568 Histidine kinase.
 
     0.713
VC82_2263
Na-Ca exchanger/integrin-beta4; Pfam:pfam03160 Calx-beta domain.
  
     0.698
VC82_574
KWG Leptospira repeat protein.
  
     0.653
VC82_170
Hypothetical protein.
 
     0.647
VC82_166
Two-component system-Response regulator; Pfam:pfam00072 Response regulator receiver domain.
 
     0.642
VC82_2350
Hypothetical protein.
  
     0.641
VC82_626
Hypothetical protein.
  
     0.640
VC82_554
RNA polymerase subunit sigma-70.
  
     0.623
VC82_2875
Conserved hypothetical lipoprotein.
  
     0.599
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.