Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_1685Cupin 2 conserved barrel domain protein; Pfam:pfam07883 Cupin domain. (121 aa)    
Predicted Functional Partners:
VC82_1683
Pfam:pfam00196 Bacterial regulatory proteins, luxR family.
 
     0.808
VC82_1684
Pfam:pfam00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
       0.801
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
    0.751
VC82_1686
Magnesium transporter; Acts as a magnesium transporter.
       0.749
VC82_1689
Hypothetical protein; Pfam:pfam14114 Domain of unknown function (DUF4286).
       0.691
VC82_1688
Hypothetical protein; Pfam:pfam06094 AIG2-like family.
       0.676
VC82_1690
Tetratricopeptide TPR_1 repeat-containing protein.
       0.608
VC82_1691
Pfam:pfam00587 tRNA synthetase class II core domain (G, H, P, S and T).
       0.600
VC82_1682
Pfam:pfam13858 Protein of unknown function (DUF4199).
       0.546
VC82_1681
Hypothetical protein; Pfam:pfam08818 Domain of unknown function (DU1801).
       0.542
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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