STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_1685Cupin 2 conserved barrel domain protein; Pfam:pfam07883 Cupin domain. (121 aa)    
Predicted Functional Partners:
VC82_1683
Pfam:pfam00196 Bacterial regulatory proteins, luxR family.
 
     0.811
VC82_1684
Pfam:pfam00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
       0.796
VC82_1686
Magnesium transporter; Acts as a magnesium transporter.
  
    0.764
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
    0.763
VC82_1689
Hypothetical protein; Pfam:pfam14114 Domain of unknown function (DUF4286).
       0.696
VC82_1688
Hypothetical protein; Pfam:pfam06094 AIG2-like family.
       0.681
VC82_1690
Tetratricopeptide TPR_1 repeat-containing protein.
       0.611
VC82_1691
Pfam:pfam00587 tRNA synthetase class II core domain (G, H, P, S and T).
       0.600
VC82_1682
Pfam:pfam13858 Protein of unknown function (DUF4199).
       0.548
VC82_1681
Hypothetical protein; Pfam:pfam08818 Domain of unknown function (DU1801).
       0.544
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.