Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC82_185Hypothetical protein. (65 aa)    
Predicted Functional Partners:
VC82_184
Hypothetical protein.
       0.558
VC82_186
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Pfam:pfam02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family.
       0.555
VC82_808
Hypothetical protein.
  
     0.548
VC82_2272
Hypothetical protein.
  
     0.513
VC82_807
Glycine dehydrogenase.
  
     0.500
VC82_2640
Fumarate hydratase.
  
     0.482
VC82_5
Conserved hypothetical periplasmic protein.
  
     0.444
VC82_1748
Pfam:pfam14014 Protein of unknown function (DUF4230).
  
     0.438
VC82_41
Membrane protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
     0.428
VC82_370
Mis12-Mtw1 protein family.
  
     0.419
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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