STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_186D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Pfam:pfam02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family. (436 aa)    
Predicted Functional Partners:
VC82_1476
Serine peptidase, family S12; Pfam:pfam00144 Beta-lactamase.
  
  
 0.914
VC82_2798
Pfam:pfam01510 N-acetylmuramoyl-L-alanine amidase.
  
   
 0.648
VC82_185
Hypothetical protein.
       0.556
VC82_2151
Pfam:pfam12796 Ankyrin repeats (3 copies).
   
   0.548
VC82_2799
Pfam:pfam00246 Zinc carboxypeptidase.
  
     0.524
VC82_1294
Heparan-alpha-glucosaminide N-acetyltransferase.
  
     0.445
VC82_2484
OmpA/MotB domain protein; Pfam:pfam00691 OmpA family.
  
     0.409
VC82_184
Hypothetical protein.
       0.404
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.