Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_186D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Pfam:pfam02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family. (436 aa)    
Predicted Functional Partners:
VC82_2281
Peptidoglycan glycosyltransferase; Pfam:pfam00912 Transglycosylase.
  
  
 0.929
VC82_1429
Penicillin-binding protein 1A; Pfam:pfam00912 Transglycosylase.
     
 0.919
VC82_1476
Serine peptidase, family S12; Pfam:pfam00144 Beta-lactamase.
  
  
 0.913
VC82_2104
Peptidoglycan glycosyltransferase; Pfam:pfam00905 Penicillin binding protein transpeptidase domain.
     
 0.907
VC82_973
Peptidoglycan glycosyltransferase; Pfam:pfam00905 Penicillin binding protein transpeptidase domain.
     
 0.907
VC82_2151
Pfam:pfam12796 Ankyrin repeats (3 copies).
   
 
 0.646
VC82_2798
Pfam:pfam01510 N-acetylmuramoyl-L-alanine amidase.
  
   
 0.642
VC82_185
Hypothetical protein.
       0.555
VC82_2799
Pfam:pfam00246 Zinc carboxypeptidase.
  
     0.524
VC82_1294
Heparan-alpha-glucosaminide N-acetyltransferase.
  
     0.445
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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