Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_1976Hypothetical protein. (63 aa)    
Predicted Functional Partners:
VC82_438
Hypothetical protein.
  
     0.551
VC82_1977
NRAMP family protein; Pfam:pfam01566 Natural resistance-associated macrophage protein.
       0.544
VC82_128
Pfam:pfam07766 LETM1-like protein.
  
     0.541
VC82_1148
Membrane protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
     0.533
VC82_1407
Hypothetical protein.
  
     0.496
VC82_1637
Hypothetical protein.
  
     0.418
VC82_1571
Hypothetical protein.
  
     0.415
VC82_1978
Hypothetical protein; Pfam:pfam01261 Xylose isomerase-like TIM barrel.
       0.406
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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