STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_1978Hypothetical protein; Pfam:pfam01261 Xylose isomerase-like TIM barrel. (339 aa)    
Predicted Functional Partners:
VC82_1979
Oxidoreductase; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold.
 
    0.825
VC82_1981
Hypothetical protein; Pfam:pfam13618 Gluconate 2-dehydrogenase subunit 3.
 
     0.706
VC82_1980
Pfam:pfam05199 GMC oxidoreductase.
       0.682
VC82_1986
Aryldialkylphosphatase; Pfam:pfam02126 Phosphotriesterase family.
  
    0.658
VC82_1982
Short-chain dehydrogenase; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
  
    0.655
VC82_1985
Pfam:pfam12831 FAD dependent oxidoreductase.
       0.655
VC82_1983
Glucokinase; Pfam:pfam00480 ROK family.
       0.653
VC82_1984
Hypothetical protein; Pfam:pfam13580 SIS domain.
       0.652
VC82_920
Pfam:pfam01261 Xylose isomerase-like TIM barrel.
  
     0.620
VC82_1977
NRAMP family protein; Pfam:pfam01566 Natural resistance-associated macrophage protein.
       0.560
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.