Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_200Phage shock protein C, PspC; Pfam:pfam04024 PspC domain. (608 aa)    
Predicted Functional Partners:
VC82_199
Pfam:pfam03551 Transcriptional regulator PadR-like family.
 
     0.887
VC82_2777
Hypothetical protein.
   
 
 0.802
VC82_197
Pfam:pfam09685 Tic20-like protein.
 
    0.730
VC82_201
Pfam:pfam10988 Protein of unknown function (DUF2807).
 
    0.709
VC82_1367
Uracil phosphoribosyltransferase.
  
     0.615
VC82_2004
Pfam:pfam04020 Membrane protein of unknown function.
  
    0.611
VC82_659
Membrane protein involved in aromatic hydrocarbon degradation; Pfam:pfam03349 Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.572
VC82_960
Hypothetical protein.
  
     0.538
VC82_2178
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
   0.530
VC82_2210
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.529
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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