Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_2012Outer membrane protein assembly complex, YaeT protein; Pfam:pfam01103 Surface antigen. (879 aa)    
Predicted Functional Partners:
VC82_3036
Pfam:pfam13525 Outer membrane lipoprotein.
 
 
 0.967
VC82_991
Putative outer membrane protein.
  
 
 
 0.954
VC82_2157
Hypothetical protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
    
   0.870
VC82_2013
Outer membrane chaperone Skp (OmpH); Pfam:pfam03938 Outer membrane protein (OmpH-like).
 
  
 0.866
VC82_2014
Outer membrane chaperone Skp (OmpH); Pfam:pfam03938 Outer membrane protein (OmpH-like).
 
  
 0.866
VC82_2010
Inorganic polyphosphate/ATP-NAD kinase; Pfam:pfam13568 Outer membrane protein beta-barrel domain.
 
 
   0.858
VC82_2011
Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.836
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.797
VC82_2325
PpiC-type peptidyl-prolyl cis-trans isomerase; Pfam:pfam00639 PPIC-type PPIASE domain.
  
 
 0.765
VC82_1305
Membrane protein; Pfam:pfam02687 FtsX-like permease family.
 
     0.760
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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