Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC82_2013Outer membrane chaperone Skp (OmpH); Pfam:pfam03938 Outer membrane protein (OmpH-like). (278 aa)    
Predicted Functional Partners:
VC82_827
Hypothetical protein.
  
   0.888
VC82_1941
SprA protein; Pfam:pfam14349 Motility related/secretion protein.
  
 
   0.883
VC82_2012
Outer membrane protein assembly complex, YaeT protein; Pfam:pfam01103 Surface antigen.
 
  
 0.866
VC82_2014
Outer membrane chaperone Skp (OmpH); Pfam:pfam03938 Outer membrane protein (OmpH-like).
 
     0.861
VC82_1393
TPR domain-containing protein.
  
 
   0.819
VC82_2010
Inorganic polyphosphate/ATP-NAD kinase; Pfam:pfam13568 Outer membrane protein beta-barrel domain.
 
 
   0.775
VC82_1918
Pfam:pfam11028 Protein of unknown function (DUF2723).
  
     0.736
VC82_2126
PorT protein; Pfam:pfam13568 Outer membrane protein beta-barrel domain.
 
     0.730
VC82_2139
ApaG.
  
     0.675
VC82_1168
Conserved hypothetical lipoprotein; Pfam:pfam13205 Bacterial Ig-like domain.
  
     0.668
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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