Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_2018Pfam:pfam00266 Aminotransferase class-V. (378 aa)    
Predicted Functional Partners:
VC82_1455
Transporter; Pfam:pfam00005 ABC transporter.
  
  
 0.715
VC82_2017
Hypothetical protein; Pfam:pfam13239 2TM domain.
 
     0.694
VC82_1453
Cysteine desulfurase; Pfam:pfam01458 Uncharacterized protein family (UPF0051).
  
 
 0.635
VC82_1457
Protein SufD; Pfam:pfam01458 Uncharacterized protein family (UPF0051).
  
 
 0.635
VC82_1459
Fe-S metabolism protein SufE; Pfam:pfam02657 Fe-S metabolizm associated domain.
  
 
 0.593
VC82_2888
Helix-turn-helix domain protein; Pfam:pfam01381 Helix-turn-helix.
  
     0.583
VC82_2016
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
       0.582
VC82_2019
Isoamylase protein-like protein; Pfam:pfam02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain).
       0.495
VC82_256
Pfam:pfam03372 Endonuclease/Exonuclease/phosphatase family.
    
   0.450
VC82_429
Pfam:pfam04245 37-kD nucleoid-associated bacterial protein.
  
     0.438
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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