Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_2121Hypothetical protein. (293 aa)    
Predicted Functional Partners:
VC82_772
Hypothetical protein.
  
     0.638
VC82_2959
Response regulator receiver protein; Pfam:pfam04397 LytTr DNA-binding domain.
  
     0.578
VC82_2968
Hypothetical protein.
  
     0.561
VC82_831
Hypothetical protein.
  
     0.536
VC82_2967
YceI family protein; Pfam:pfam04264 YceI-like domain.
  
     0.531
VC82_779
Hypothetical protein.
  
     0.488
VC82_372
TonB-dependent receptor; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
     0.477
VC82_777
Hypothetical protein.
  
     0.472
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.468
VC82_2866
Hypothetical protein; Pfam:pfam08014 Domain of unknown function (DUF1704).
  
     0.468
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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