Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_213Hypothetical protein. (231 aa)    
Predicted Functional Partners:
VC82_599
Pfam:pfam01951 Archease protein family (MTH1598/TM1083).
  
     0.558
VC82_214
Transposase; Pfam:pfam00665 Integrase core domain.
       0.556
VC82_1308
Putative TolB protein; Pfam:pfam07676 WD40-like Beta Propeller Repeat.
  
     0.552
VC82_580
Hypothetical protein.
  
     0.542
VC82_1307
Pfam:pfam04389 Peptidase family M28.
  
     0.536
VC82_218
Hypothetical protein.
  
     0.529
VC82_592
Pfam:pfam12900 Pyridoxamine 5'-phosphate oxidase.
  
     0.524
VC82_215
ATP-binding protein; Pfam:pfam01695 IstB-like ATP binding protein.
       0.503
VC82_574
KWG Leptospira repeat protein.
  
     0.502
VC82_2509
Hypothetical protein; Pfam:pfam04932 O-Antigen ligase.
  
     0.501
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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