Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_2158Hypothetical protein; Pfam:pfam13715 Domain of unknown function (DUF4480). (258 aa)    
Predicted Functional Partners:
VC82_2157
Hypothetical protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
 
    
0.817
VC82_2395
Peptidoglycan-binding protein LysM; Pfam:pfam13458 Periplasmic binding protein.
  
     0.592
VC82_1393
TPR domain-containing protein.
  
     0.578
VC82_3013
Putative membrane protein; Pfam:pfam11751 Protein of unknown function (DUF3308).
  
     0.568
VC82_1166
Hypothetical protein.
  
     0.560
VC82_1107
Hypothetical protein.
  
     0.541
VC82_960
Hypothetical protein.
  
     0.535
VC82_2156
Hypothetical protein.
 
     0.529
VC82_2159
Hypothetical protein.
       0.527
VC82_660
GTP cyclohydrolase I; Pfam:pfam13585 C-terminal domain of CHU protein family.
  
 
   0.525
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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