Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_2192Pfam:pfam00072 Response regulator receiver domain. (234 aa)    
Predicted Functional Partners:
VC82_2191
Pfam:pfam06580 Histidine kinase.
 
   0.956
VC82_796
Putative signal transduction histidine kinase; Pfam:pfam06580 Histidine kinase.
 
   0.812
VC82_162
Signal transduction histidine kinase, LytS; Pfam:pfam13239 2TM domain.
  
   0.807
VC82_935
Pfam:pfam06580 Histidine kinase.
 
   0.806
VC82_2193
Pfam:pfam01738 Dienelactone hydrolase family.
       0.752
VC82_2194
Alpha-N-acetylgalactosaminidase; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold.
       0.752
VC82_1969
Putative signal transduction histidine kinase; Pfam:pfam06580 Histidine kinase.
 
   0.751
VC82_1532
Putative signal transduction histidine kinase; Pfam:pfam06580 Histidine kinase.
 
   0.749
VC82_2195
Galactokinase; Pfam:pfam08544 GHMP kinases C terminal; Belongs to the GHMP kinase family.
       0.736
VC82_2196
Glucose-1-phosphate thymidylyltransferase; Pfam:pfam00483 Nucleotidyl transferase.
       0.736
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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