Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC82_246Pfam:pfam04977 Septum formation initiator. (113 aa)    
Predicted Functional Partners:
VC82_2111
Putative cell division protein.
 
 
 
 0.922
VC82_245
Uridine kinase; Pfam:pfam00485 Phosphoribulokinase / Uridine kinase family.
       0.820
VC82_247
Pfam:pfam01642 Methylmalonyl-CoA mutase.
       0.820
VC82_2104
Peptidoglycan glycosyltransferase; Pfam:pfam00905 Penicillin binding protein transpeptidase domain.
 
 
 0.726
VC82_1347
Hypothetical protein.
 
 
 0.693
VC82_248
Hypothetical protein.
       0.682
VC82_2717
Pfam:pfam05893 Acyl-CoA reductase (LuxC).
  
     0.677
VC82_251
Hypothetical protein.
 
     0.658
VC82_1071
Pfam:pfam04443 Acyl-protein synthetase, LuxE.
  
     0.633
VC82_973
Peptidoglycan glycosyltransferase; Pfam:pfam00905 Penicillin binding protein transpeptidase domain.
 
 
 0.613
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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