STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_2464SAM-dependent methyltransferase. (392 aa)    
Predicted Functional Partners:
VC82_2465
Permease; Pfam:pfam01594 Domain of unknown function DUF20.
  
    0.799
VC82_2466
Conserved hypothetical periplasmic protein; Pfam:pfam13709 Domain of unknown function (DUF4159).
       0.796
VC82_91
Regulatory protein MarR; Pfam:pfam01047 MarR family.
  
     0.653
VC82_2467
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.622
VC82_2468
Hypothetical protein.
       0.594
VC82_642
DUF1599 family protein; Pfam:pfam07659 Domain of Unknown Function (DUF1599).
  
     0.574
VC82_3030
Pfam:pfam00535 Glycosyl transferase family 2.
  
    0.540
VC82_1261
Hypothetical protein; Pfam:pfam12705 PD-(D/E)XK nuclease superfamily.
  
     0.498
VC82_287
Hypothetical protein; Pfam:pfam03993 Domain of Unknown Function (DUF349).
  
     0.479
VC82_1258
Pfam:pfam13361 UvrD-like helicase C-terminal domain.
  
   
 0.440
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.