Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_251Hypothetical protein. (216 aa)    
Predicted Functional Partners:
VC82_249
Cobyrinic acid ac-diamide synthase; Pfam:pfam01656 CobQ/CobB/MinD/ParA nucleotide binding domain.
       0.820
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.820
VC82_250
Chromosome partitioning protein ParB; Pfam:pfam02195 ParB-like nuclease domain; Belongs to the ParB family.
       0.791
VC82_253
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.767
VC82_254
Pfam:pfam08889 WbqC-like protein family.
 
     0.744
VC82_2014
Outer membrane chaperone Skp (OmpH); Pfam:pfam03938 Outer membrane protein (OmpH-like).
  
     0.726
VC82_1918
Pfam:pfam11028 Protein of unknown function (DUF2723).
  
     0.717
VC82_2124
Pfam:pfam01103 Surface antigen.
  
    0.698
VC82_959
Lipoprotein; Pfam:pfam04390 Lipopolysaccharide-assembly.
  
    0.692
VC82_2213
Pfam:pfam03793 PASTA domain.
  
     0.669
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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