Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_255Membrane protein. (106 aa)    
Predicted Functional Partners:
VC82_254
Pfam:pfam08889 WbqC-like protein family.
       0.817
VC82_253
Signal peptidase I; Belongs to the peptidase S26 family.
       0.660
VC82_251
Hypothetical protein.
 
     0.601
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.541
VC82_249
Cobyrinic acid ac-diamide synthase; Pfam:pfam01656 CobQ/CobB/MinD/ParA nucleotide binding domain.
       0.539
VC82_250
Chromosome partitioning protein ParB; Pfam:pfam02195 ParB-like nuclease domain; Belongs to the ParB family.
       0.509
VC82_2198
valyl-tRNA synthetase; Pfam:pfam00887 Acyl CoA binding protein.
  
     0.441
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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