Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_256Pfam:pfam03372 Endonuclease/Exonuclease/phosphatase family. (343 aa)    
Predicted Functional Partners:
VC82_258
Peptidase S54, rhomboid domain protein; Pfam:pfam01694 Rhomboid family.
 
     0.842
VC82_257
Protease; Pfam:pfam01694 Rhomboid family.
       0.820
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
     
 0.820
VC82_260
Riboflavin synthase subunit beta.
       0.819
VC82_262
Tetratricopeptide TPR_1 repeat-containing protein.
 
     0.567
VC82_97
Trehalose-phosphatase; Pfam:pfam00982 Glycosyltransferase family 20.
   
    0.551
yidC
Membrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.516
VC82_1918
Pfam:pfam11028 Protein of unknown function (DUF2723).
  
     0.507
VC82_419
Hypothetical protein.
  
     0.504
VC82_370
Mis12-Mtw1 protein family.
  
     0.502
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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