Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC82_264Conserved hypothetical periplasmic protein. (138 aa)    
Predicted Functional Partners:
VC82_265
Pfam:pfam05258 Protein of unknown function (DUF721).
 
     0.841
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
       0.794
VC82_1200
Thioesterase; Pfam:pfam13279 Thioesterase-like superfamily.
  
     0.650
VC82_1368
Hypothetical protein.
  
     0.635
VC82_1078
Hypothetical protein; Pfam:pfam14093 Domain of unknown function (DUF4271).
  
     0.633
VC82_2654
Hypothetical protein; Pfam:pfam13557 Putative MetA-pathway of phenol degradation.
  
     0.614
VC82_2273
Hypothetical protein; Pfam:pfam14289 Domain of unknown function (DUF4369).
  
     0.610
VC82_550
Hypothetical protein.
  
     0.604
VC82_53
Conserved hypothetical periplasmic protein; Pfam:pfam14060 Domain of unknown function (DUF4252).
  
     0.596
VC82_551
Pfam:pfam12732 YtxH-like protein.
  
     0.595
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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