STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_272Amidohydrolase; Pfam:pfam13147 Amidohydrolase. (982 aa)    
Predicted Functional Partners:
VC82_273
Pfam:pfam13147 Amidohydrolase.
    
0.935
VC82_271
Amino acid permease; Pfam:pfam12725 Protein of unknown function (DUF3810).
       0.645
VC82_270
Pfam:pfam00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
       0.582
VC82_268
Phosphoesterase RecJ domain protein; Pfam:pfam01368 DHH family.
       0.581
VC82_269
Peptidylprolyl isomerase; Pfam:pfam00254 FKBP-type peptidyl-prolyl cis-trans isomerase.
       0.581
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.534
VC82_1737
Histidine ammonia-lyase; Pfam:pfam00221 Aromatic amino acid lyase.
  
  
 0.534
VC82_460
Secreted protein containing N-terminal zinc-dependent carboxypeptidase related domain; Pfam:pfam00246 Zinc carboxypeptidase.
  
     0.515
VC82_274
Hypothetical protein.
       0.490
VC82_267
Pfam:pfam09423 PhoD-like phosphatase.
       0.433
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.