STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_280Oxidoreductase; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold. (483 aa)    
Predicted Functional Partners:
VC82_2801
Conserved hypothetical periplasmic protein; Pfam:pfam06439 Domain of Unknown Function (DUF1080).
  
     0.735
VC82_1554
Putative secreted glycosyl hydrolase; Pfam:pfam06439 Domain of Unknown Function (DUF1080).
 
     0.627
VC82_2857
Putative secreted glycosyl hydrolase; Pfam:pfam06439 Domain of Unknown Function (DUF1080).
 
     0.616
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
       0.566
VC82_278
Pfam:pfam01475 Ferric uptake regulator family; Belongs to the Fur family.
       0.548
VC82_281
Conserved hypothetical periplasmic protein; Pfam:pfam13100 OstA-like protein.
 
     0.536
VC82_923
Hypothetical protein; Pfam:pfam06439 Domain of Unknown Function (DUF1080).
 
     0.515
VC82_277
MFS transporter; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.469
VC82_1912
Arylsulfatase; Pfam:pfam00884 Sulfatase.
  
    0.467
VC82_2194
Alpha-N-acetylgalactosaminidase; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold.
  
     0.457
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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