Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_283Tetratricopeptide TPR_1 repeat-containing protein; Pfam:pfam13414 TPR repeat. (467 aa)    
Predicted Functional Partners:
VC82_284
Membrane protein; Pfam:pfam04018 Domain of unknown function (DUF368).
       0.719
VC82_286
Pfam:pfam08501 Shikimate dehydrogenase substrate binding domain.
  
    0.698
VC82_285
Membrane protein; Pfam:pfam04018 Domain of unknown function (DUF368).
       0.673
VC82_2448
Tetratricopeptide TPR_1 repeat-containing protein; Pfam:pfam13414 TPR repeat.
 
     0.661
VC82_281
Conserved hypothetical periplasmic protein; Pfam:pfam13100 OstA-like protein.
 
  
 0.644
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
   
 
 0.635
VC82_2273
Hypothetical protein; Pfam:pfam14289 Domain of unknown function (DUF4369).
  
     0.608
VC82_679
Hypothetical protein; Pfam:pfam00593 TonB dependent receptor.
 
   
 0.576
VC82_2124
Pfam:pfam01103 Surface antigen.
 
     0.571
VC82_282
Acetylornithine transaminase; Pfam:pfam00202 Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.552
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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