Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_296Hypothetical protein; Pfam:pfam13548 Domain of unknown function (DUF4126). (190 aa)    
Predicted Functional Partners:
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
       0.800
VC82_294
Pfam:pfam13419 Haloacid dehalogenase-like hydrolase.
       0.790
VC82_293
Pfam:pfam00465 Iron-containing alcohol dehydrogenase.
       0.786
VC82_297
ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member; Pfam:pfam13604 AAA domain.
       0.751
VC82_292
Pfam:pfam01553 Acyltransferase.
       0.745
VC82_299
Pfam:pfam12864 Protein of unknown function (DUF3822).
       0.543
VC82_298
Hypothetical protein.
       0.541
VC82_300
RNA methyltransferase, RsmD family; Pfam:pfam03602 Conserved hypothetical protein 95.
       0.536
VC82_1679
Hypothetical protein; Pfam:pfam05154 TM2 domain.
  
     0.523
VC82_1748
Pfam:pfam14014 Protein of unknown function (DUF4230).
  
     0.462
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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