Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
VC82_299Pfam:pfam12864 Protein of unknown function (DUF3822). (279 aa)    
Predicted Functional Partners:
VC82_298
Hypothetical protein.
 
     0.871
VC82_300
RNA methyltransferase, RsmD family; Pfam:pfam03602 Conserved hypothetical protein 95.
  
    0.845
VC82_297
ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member; Pfam:pfam13604 AAA domain.
 
     0.709
VC82_1417
Sporulation domain-containing protein; Pfam:pfam05036 Sporulation related domain.
  
    0.698
VC82_2409
Hypothetical protein.
  
     0.682
VC82_2410
Hypothetical protein.
  
     0.661
VC82_25
histidyl-tRNA synthetase.
  
     0.620
VC82_1996
Membrane protein; Pfam:pfam13502 AsmA-like C-terminal region.
  
     0.590
VC82_1421
Hypothetical protein.
  
     0.574
VC82_376
Smr protein.
  
     0.571
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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