Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_3012Pfam:pfam00440 Bacterial regulatory proteins, tetR family. (227 aa)    
Predicted Functional Partners:
VC82_3011
Pfam:pfam01244 Membrane dipeptidase (Peptidase family M19).
       0.773
VC82_3009
Endoribonuclease L-PSP; Pfam:pfam14588 YjgF/chorismate_mutase-like, putative endoribonuclease.
  
    0.768
VC82_3010
Threonine aldolase; Pfam:pfam14031 Putative serine dehydratase domain.
  
    0.768
VC82_1371
Pfam:pfam00440 Bacterial regulatory proteins, tetR family.
  
     0.576
VC82_1330
Hypothetical protein; Pfam:pfam13585 C-terminal domain of CHU protein family.
  
     0.523
VC82_2619
Sporulation domain-containing protein.
  
     0.522
VC82_3008
Gluconate transporter; Pfam:pfam02447 GntP family permease.
       0.516
VC82_418
Pfam:pfam08327 Activator of Hsp90 ATPase-like protein.
  
     0.461
VC82_1329
Pfam:pfam11751 Protein of unknown function (DUF3308).
  
     0.456
VC82_2804
Pfam:pfam13519 von Willebrand factor type A domain.
  
     0.456
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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