Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_302Hypothetical protein; Pfam:pfam15071 Transmembrane family 220, helix. (114 aa)    
Predicted Functional Partners:
VC82_306
Pfam:pfam01040 UbiA prenyltransferase family.
 
     0.821
VC82_304
Hypothetical protein.
 
     0.815
VC82_307
Pfam:pfam01026 TatD related DNase.
 
     0.809
VC82_305
Pfam:pfam01761 3-dehydroquinate synthase.
 
     0.805
VC82_303
Pfam:pfam01663 Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.786
VC82_516
(2Fe-2S)-binding protein.
  
     0.650
VC82_1208
Pfam:pfam05721 Phytanoyl-CoA dioxygenase (PhyH).
  
     0.523
VC82_2511
Hypothetical protein.
  
     0.515
VC82_168
Hypothetical protein; Pfam:pfam07366 SnoaL-like polyketide cyclase.
  
     0.512
VC82_2585
Conserved hypothetical lipoprotein.
  
     0.509
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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