Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC82_304Hypothetical protein. (398 aa)    
Predicted Functional Partners:
VC82_307
Pfam:pfam01026 TatD related DNase.
 
  
 0.955
VC82_303
Pfam:pfam01663 Type I phosphodiesterase / nucleotide pyrophosphatase.
 
   
 0.954
VC82_306
Pfam:pfam01040 UbiA prenyltransferase family.
 
   
 0.952
VC82_305
Pfam:pfam01761 3-dehydroquinate synthase.
 
     0.948
VC82_302
Hypothetical protein; Pfam:pfam15071 Transmembrane family 220, helix.
 
     0.815
VC82_310
Hypothetical protein.
 
   
 0.813
VC82_102
Putative glycosyl hydrolase (Putative secreted protein); Pfam:pfam06283 Trehalose utilisation.
 
  
 0.753
VC82_309
Membrane protein.
 
     0.567
VC82_2521
PKD domain-containing protein; Pfam:pfam01344 Kelch motif.
  
    0.435
VC82_997
Dehydrogenase; Pfam:pfam00034 Cytochrome c.
 
     0.428
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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