Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_310Hypothetical protein. (284 aa)    
Predicted Functional Partners:
VC82_307
Pfam:pfam01026 TatD related DNase.
 
   
 0.814
VC82_304
Hypothetical protein.
 
   
 0.813
VC82_303
Pfam:pfam01663 Type I phosphodiesterase / nucleotide pyrophosphatase.
 
   
 0.808
VC82_306
Pfam:pfam01040 UbiA prenyltransferase family.
 
   
 0.804
VC82_305
Pfam:pfam01761 3-dehydroquinate synthase.
 
     0.776
VC82_102
Putative glycosyl hydrolase (Putative secreted protein); Pfam:pfam06283 Trehalose utilisation.
  
     0.700
VC82_311
tRNA-hydroxylase; Pfam:pfam06175 tRNA-(2-methylthio-N-6-isopentenyl-adenosine)-hydroxylase (MiaE).
       0.538
VC82_2520
Putative secreted protein; Pfam:pfam11721 Di-glucose binding within endoplasmic reticulum.
  
     0.526
VC82_2521
PKD domain-containing protein; Pfam:pfam01344 Kelch motif.
  
     0.512
VC82_2585
Conserved hypothetical lipoprotein.
  
     0.468
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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