Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC82_321Peptidoglycan-binding protein; Pfam:pfam01476 LysM domain. (159 aa)    
Predicted Functional Partners:
VC82_2797
Hypothetical protein.
   
  
 0.886
VC82_2646
Hypothetical protein.
 
   0.786
VC82_2941
Hypothetical protein; Pfam:pfam07411 Domain of unknown function (DUF1508).
  
   0.755
VC82_97
Trehalose-phosphatase; Pfam:pfam00982 Glycosyltransferase family 20.
   
  
 0.741
VC82_2459
BRAMP domain-containing protein; Pfam:pfam03358 NADPH-dependent FMN reductase.
   
  
 0.587
VC82_320
Pfam:pfam00575 S1 RNA binding domain.
       0.525
VC82_2714
Pfam:pfam06078 Bacterial protein of unknown function (DUF937).
 
     0.473
VC82_1301
Hypothetical protein.
 
  
 0.452
VC82_552
Osmotically inducible protein Y; Pfam:pfam04972 BON domain.
  
  
 0.430
VC82_2338
Hypothetical protein.
  
     0.403
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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