Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC82_344Pfam:pfam13505 Outer membrane protein beta-barrel domain. (161 aa)    
Predicted Functional Partners:
VC82_894
Hypothetical protein.
  
     0.628
VC82_130
Hypothetical protein; Pfam:pfam13239 2TM domain.
  
     0.561
VC82_345
Hypothetical protein.
 
     0.535
VC82_343
Hypothetical protein.
  
  
 0.498
VC82_536
Hypothetical protein.
  
     0.481
VC82_535
Hypothetical protein; Pfam:pfam03432 Relaxase/Mobilisation nuclease domain.
  
     0.421
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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