Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_345Hypothetical protein. (172 aa)    
Predicted Functional Partners:
VC82_1069
Hypothetical protein.
  
     0.667
VC82_660
GTP cyclohydrolase I; Pfam:pfam13585 C-terminal domain of CHU protein family.
  
     0.648
VC82_2930
Hypothetical protein.
  
     0.640
VC82_1070
Conserved hypothetical periplasmic protein.
  
     0.626
VC82_1516
Hypothetical protein.
  
     0.564
VC82_2000
Hypothetical protein.
  
     0.562
xerC-2
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.542
VC82_344
Pfam:pfam13505 Outer membrane protein beta-barrel domain.
 
     0.535
VC82_2797
Hypothetical protein.
  
     0.529
VC82_2158
Hypothetical protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
    0.518
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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