Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VC82_348 | VC82_349 | VC82_348 | VC82_349 | NADH dehydrogenase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase. | Amidohydrolase; Pfam:pfam01546 Peptidase family M20/M25/M40. | 0.543 |
VC82_348 | mdh | VC82_348 | VC82_669 | NADH dehydrogenase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.400 |
VC82_348 | ppa | VC82_348 | VC82_2037 | NADH dehydrogenase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase. | Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | 0.403 |
VC82_349 | VC82_348 | VC82_349 | VC82_348 | Amidohydrolase; Pfam:pfam01546 Peptidase family M20/M25/M40. | NADH dehydrogenase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase. | 0.543 |
mdh | VC82_348 | VC82_669 | VC82_348 | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | NADH dehydrogenase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase. | 0.400 |
ppa | VC82_348 | VC82_2037 | VC82_348 | Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | NADH dehydrogenase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase. | 0.403 |