Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC82_352Pfam:pfam01553 Acyltransferase. (269 aa)    
Predicted Functional Partners:
VC82_410
Hypothetical protein.
  
     0.677
VC82_2103
S-adenosyl-methyltransferase MraW.
  
     0.671
VC82_1027
Mevalonate kinase.
  
 
   0.659
VC82_1214
Hypothetical protein.
  
     0.593
VC82_2731
Hypothetical protein.
  
     0.570
VC82_2200
Pfam:pfam01148 Cytidylyltransferase family; Belongs to the CDS family.
    
 0.544
VC82_2205
Orotate phosphoribosyltransferase.
  
     0.488
VC82_1353
Hypothetical protein.
  
     0.447
VC82_1026
Pfam:pfam01040 UbiA prenyltransferase family.
 
   
 0.445
VC82_1258
Pfam:pfam13361 UvrD-like helicase C-terminal domain.
 
     0.441
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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